Yoshinori Shichida

Publication List Details

Period

2002 - 2006

Number

22

Co-Authors

Divergent Selection on Opsins Drives Incipient Speciation in Lake Victoria Cichlids (2006)

Yohey Terai, Ole Seehausen, Takeshi Sasaki, Kazuhiko Takahashi, Shinji Mizoiri, Tohru Sugawara, ...

Divergent natural selection acting on ecological traits, which also affect mate choice, is a key element of ecological speciation theory, but has not previously been demonstrated at the molecular...

Generation of knock-in mice carrying third cones with spectral sensitivity different from S and L cones (2005)

Onishi, Akishi, Hasegawa, Jun, Imai, Hiroo, Chisaka, Osamu, Ueda, Yoshiki, Honda, Yoshihito, ...

Red-green color vision in primates is unique in the sense that it is mediated by two photoreceptor cells that are indistinguishable in all aspects except for their visual pigments. In order to...

Constraints of Opsin Structure on the Ligand-binding Site: Studies with Ring-fused Retinals¶ (2002)

Takahiro Hirano, In Taek Lim, Don Moon Kim, Xiang-Guo Zheng, Kazuo Yoshihara, Yoshiaki Oyama, ...

Ring-fused retinal analogs were designed to examine the hula-twist mode of the photoisomerization of the 9-cis retinylidene chromophore. Two 9-cis retinal analogs, the C11–C13 five-membered...

Local and distant protein structural changes on photoisomerization of the retinal in bacteriorhodopsin

Kandori, Hideki, Kinoshita, Norimichi, Yamazaki, Yoichi, Maeda, Akio, Shichida, Yoshinori, Needleman, Richard, ...

The photoisomerization of the retinal in bacteriorhodopsin is selective and efficient and yields perturbation of the protein structure within femtoseconds. The stored light energy in the primary...

Highly conserved glutamic acid in the extracellular IV–V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family

Terakita, Akihisa, Yamashita, Takahiro, Shichida, Yoshinori

Retinochrome is a member of the rhodopsin family having a chromophore retinal and functioning as a retinal photoisomerase in squid photoreceptor cells. Unlike vertebrate rhodopsins, but like many...

Single amino acid residue as a functional determinant of rod and cone visual pigments

Imai, Hiroo, Kojima, Daisuke, Oura, Tomonori, Tachibanaki, Shuji, Terakita, Akihisa, Shichida, Yoshinori

The visual transduction processes in rod and cone photoreceptor cells begin with photon absorption by the different types of visual pigments. Cone visual pigments exhibit faster regeneration from...

Tight Asp-85–Thr-89 association during the pump switch of bacteriorhodopsin

Kandori, Hideki, Yamazaki, Yoichi, Shichida, Yoshinori, Raap, Jan, Lugtenburg, Johan, Belenky, Marina, ...

Unidirectional proton transport in bacteriorhodopsin is enforced by the switching machinery of the active site. Threonine 89 is located in this region, with its O—H group forming a hydrogen bond...

Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography

Okada, Tetsuji, Fujiyoshi, Yoshinori, Silow, Maria, Navarro, Javier, Landau, Ehud M., Shichida, Yoshinori

Activation of G protein-coupled receptors (GPCRs) is triggered and regulated by structural rearrangement of the transmembrane heptahelical bundle containing a number of highly conserved residues. In...

Bistable UV pigment in the lamprey pineal

Koyanagi, Mitsumasa, Kawano, Emi, Kinugawa, Yoshimi, Oishi, Tadashi, Shichida, Yoshinori, Tamotsu, Satoshi, ...

Lower vertebrates can detect UV light with the pineal complex independently of eyes. Electrophysiological studies, together with chromophore extraction analysis, have suggested that the underlying...

Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi

Sugawara, Tohru, Terai, Yohey, Imai, Hiroo, Turner, George F., Koblmüller, Stephan, Sturmbauer, Christian, ...

Many examples of the appearance of similar traits in different lineages are known during the evolution of organisms. However, the underlying genetic mechanisms have been elucidated in very few cases....

A rhodopsin exhibiting binding ability to agonist all-trans-retinal

Tsukamoto, Hisao, Terakita, Akihisa, Shichida, Yoshinori

Rhodopsins are the members of the family of G protein-coupled receptors that have diverged from ligand-binding receptors into photoreceptive pigments. Vertebrate rhodopsins are able to bind the...

Local and distant protein structural changes on photoisomerization of the retinal in bacteriorhodopsin

Kandori, Hideki, Kinoshita, Norimichi, Yamazaki, Yoichi, Maeda, Akio, Shichida, Yoshinori, Needleman, Richard, ...

The photoisomerization of the retinal in bacteriorhodopsin is selective and efficient and yields perturbation of the protein structure within femtoseconds. The stored light energy in the primary...

Highly conserved glutamic acid in the extracellular IV–V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family

Terakita, Akihisa, Yamashita, Takahiro, Shichida, Yoshinori

Retinochrome is a member of the rhodopsin family having a chromophore retinal and functioning as a retinal photoisomerase in squid photoreceptor cells. Unlike vertebrate rhodopsins, but like many...

Single amino acid residue as a functional determinant of rod and cone visual pigments

Imai, Hiroo, Kojima, Daisuke, Oura, Tomonori, Tachibanaki, Shuji, Terakita, Akihisa, Shichida, Yoshinori

The visual transduction processes in rod and cone photoreceptor cells begin with photon absorption by the different types of visual pigments. Cone visual pigments exhibit faster regeneration from...

Tight Asp-85–Thr-89 association during the pump switch of bacteriorhodopsin

Kandori, Hideki, Yamazaki, Yoichi, Shichida, Yoshinori, Raap, Jan, Lugtenburg, Johan, Belenky, Marina, ...

Unidirectional proton transport in bacteriorhodopsin is enforced by the switching machinery of the active site. Threonine 89 is located in this region, with its O—H group forming a hydrogen bond...

Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography

Okada, Tetsuji, Fujiyoshi, Yoshinori, Silow, Maria, Navarro, Javier, Landau, Ehud M., Shichida, Yoshinori

Activation of G protein-coupled receptors (GPCRs) is triggered and regulated by structural rearrangement of the transmembrane heptahelical bundle containing a number of highly conserved residues. In...

Bistable UV pigment in the lamprey pineal

Koyanagi, Mitsumasa, Kawano, Emi, Kinugawa, Yoshimi, Oishi, Tadashi, Shichida, Yoshinori, Tamotsu, Satoshi, ...

Lower vertebrates can detect UV light with the pineal complex independently of eyes. Electrophysiological studies, together with chromophore extraction analysis, have suggested that the underlying...

Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi

Sugawara, Tohru, Terai, Yohey, Imai, Hiroo, Turner, George F., Koblmüller, Stephan, Sturmbauer, Christian, ...

Many examples of the appearance of similar traits in different lineages are known during the evolution of organisms. However, the underlying genetic mechanisms have been elucidated in very few cases....

A rhodopsin exhibiting binding ability to agonist all-trans-retinal

Tsukamoto, Hisao, Terakita, Akihisa, Shichida, Yoshinori

Rhodopsins are the members of the family of G protein-coupled receptors that have diverged from ligand-binding receptors into photoreceptive pigments. Vertebrate rhodopsins are able to bind the...

Divergent Selection on Opsins Drives Incipient Speciation in Lake Victoria Cichlids

Terai, Yohey, Seehausen, Ole, Sasaki, Takeshi, Takahashi, Kazuhiko, Mizoiri, Shinji, Sugawara, Tohru, ...

Divergent natural selection acting on ecological traits, which also affect mate choice, is a key element of ecological speciation theory, but has not previously been demonstrated at the molecular...

Physiological Properties of Rod Photoreceptor Cells in Green-sensitive Cone Pigment Knock-in Mice

Sakurai, Keisuke, Onishi, Akishi, Imai, Hiroo, Chisaka, Osamu, Ueda, Yoshiki, Usukura, Jiro, ...

Rod and cone photoreceptor cells that are responsible for scotopic and photopic vision, respectively, exhibit photoresponses different from each other and contain similar phototransduction proteins...