Yoshiharu Sato

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana (2007)

Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...

We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...

On Tracking-ability of a Stochastic Genetic Algorithm to Changing Environments (1997)

Masaharu Munetomo, Yoshiaki Takai, Yoshiharu Sato

A stochastic genetic algorithm (StGA) effectively searches an optimal action which maximizes the probability to have reward payoffs in stochastic environments by employing stochastic learning...

Computational analysis on the transient movement of helices in sensory rhodopsin II

Sato, Yoshiharu, 畑, 昌之, Hata, Masayuki, 根矢, 三郎, Neya, Saburo, 星野, 忠次, ...

MD simulation of sensory rhodopsin II was executed for three intermediates (ground state,K-state,M-state) appearing in its photocycle. We observed a large displacement of the cytoplasmic side of...

Computational analysis on the transient movement of helices in sensory rhodopsin II

Sato, Yoshiharu, 畑, 昌之, Hata, Masayuki, 根矢, 三郎, Neya, Saburo, 星野, 忠次, ...

MD simulation of sensory rhodopsin II was executed for three intermediates (ground state,K-state,M-state) appearing in its photocycle. We observed a large displacement of the cytoplasmic side of...

Computational analysis on the transient movement of helices in sensory rhodopsin II

Sato, Yoshiharu, 畑, 昌之, Hata, Masayuki, 根矢, 三郎, Neya, Saburo, 星野, 忠次, ...

MD simulation of sensory rhodopsin II was executed for three intermediates (ground state,K-state,M-state) appearing in its photocycle. We observed a large displacement of the cytoplasmic side of...

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...

We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

Matsuya, Akihiro, Sakate, Ryuichi, Kawahara, Yoshihiro, Koyanagi, Kanako O., Sato, Yoshiharu, Fujii, Yasuyuki, ...

Orthologs are genes in different species that evolved from a common ancestral gene by speciation. Currently, with the rapid growth of transcriptome data of various species, more reliable orthology...

Kullback-Leibler Information Consistent Estimation for Censored Data

Akio Suzukawa, Hideyuki Imai, Yoshiharu Sato

Approximate likelihood, information criterion, Kaplan-Meier estimator, maximum likelihood estimation,

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs

Takeda, Jun-ichi, Suzuki, Yutaka, Sakate, Ryuichi, Sato, Yoshiharu, Seki, Masahide, Irie, Takuma, ...

Using full-length cDNA sequences, we compared alternative splicing (AS) in humans and mice. The alignment of the human and mouse genomes showed that 86% of 199 426 total exons in human AS variants...