Wen Zhang

Publication List Details

Period

1990 - 2008

Number

52

Co-Authors

Donor age and cell passage affects differentiation potential of murine bone marrow-derived stem cells (2008)

Kretlow, James D, Jin, Yu-Qing, Liu, Wei, Zhang, Wen, Hong, Tan-Hui, Zhou, Guangdong, ...

Abstract Background Bone marrow-derived mesenchymal stem cells (BMSCs) are a widely researched adult stem cell population capable of differentiation into various lineages. Because many promising...

Adaptation and Performance of the Cartesian Coordinates Fast Multipole Method for Nanomagnetic Simulations (2008)

Zhang, Wen, Haas, Stephan

An implementation of the fast multiple method (FMM) is performed for magnetic systems with long-ranged dipolar interactions. Expansion in spherical harmonics of the original FMM is replaced by...

Prevalence of four different subgenotypes of genotype 4 hepatitis E virus among swine in the Shanghai area of China (2008)

Yan, Yijia, Zhang, Wen, Shen, Quan, Cui, Li, Hua, Xiuguo

Abstract Background Hepatitis E virus (HEV) is a zoonotic pathogen of which swine was reported as major reservoirs. HEV has been divided into 4 different genotypes according to phylogenetic analysis....

Mechanism of genistein in the regulation of pancreatic beta-cell proliferation (2007)

Zhang, Wen

This study was designed to examine the effect of genistein, a botanical derived primarily from legumes, on pancreatic β-cell proliferation and the related molecular mechanisms. Diabetes mellitus...

Mechanism of genistein in the regulation of pancreatic beta-cell proliferation (2007)

Zhang, Wen

This study was designed to examine the effect of genistein, a botanical derived primarily from legumes, on pancreatic β-cell proliferation and the related molecular mechanisms. Diabetes mellitus...

Cloning of full genome sequence of hepatitis E virus of Shanghai swine isolate using RACE method (2007)

Shen, Quan, Zhang, Wen, Cao, Xiangrong, Mou, Jing, Cui, Li, Hua, Xiuguo

Abstract Genotype 4 hepatitis E virus (HEV) was reportedly transmitted freely between humans and swine in eastern China. The full-length genomic sequence of Shanghai swine isolate (SH-SW-zs1)...

Scaling Analysis and Application: Phase Diagram of Magnetic Nanorings and Elliptical Nanoparticles (2007)

Zhang, Wen, Singh, Rohit, Bray-Ali, Noah, Haas, Stephan

The magnetic properties of single-domain nanoparticles with different geometric shapes, crystalline anisotropies and lattice structures are investigated. A recently proposed scaling approach is shown...

Functional coordination of alternative splicing in the mammalian central nervous system (2007)

Fagnani, Matthew, Barash, Yoseph, Ip, Joanna Y, Misquitta, Christine, Pan, Qun, Saltzman, Arneet L, ...

Abstract Background Alternative splicing (AS) functions to expand proteomic complexity and plays numerous important roles in gene regulation. However, the extent to which AS coordinates functions in...

Dynamics and diversity of prokaryotic communities in marine sediments of Hong Kong (2007)

Zhang, Wen

Thesis (Ph.D.)--Hong Kong University of Science and Technology, 2007

Dynamics and diversity of prokaryotic communities in marine sediments of Hong Kong / (2007)

Zhang, Wen.

Thesis (Ph.D.)--Hong Kong University of Science and Technology, 2007.

The functional landscape of mouse gene expression (2004)

Zhang, Wen, Morris, Quaid D, Chang, Richard, Shai, Ofer, Bakowski, Malina A, Mitsakakis, Nicholas, ...

Abstract Background Large-scale quantitative analysis of transcriptional co-expression has been used to dissect regulatory networks and to predict the functions of new genes discovered by genome...

The damping of vibration with a particle impact damper /--by Wen Zhang. (1995)

Zhang, Wen.

Thesis (M.S.)--Mechanical Engineering Dept., South Dakota State University, 1995.

Numerical solution of ordinary differential equations with applications /--by Wen Zhang. (1990)

Zhang, Wen.

Thesis (Ph. D. in Applied Mathematics)--Southern Methodist University.

Molecular characteristics of non-small cell lung cancer

Nacht, Mariana, Dracheva, Tatiana, Gao, Yuhong, Fujii, Takeshi, Chen, Yidong, Player, Audrey, ...

We used hierarchical clustering to examine gene expression profiles generated by serial analysis of gene expression (SAGE) in a total of nine normal lung epithelial cells and non-small cell lung...

Tumor Necrosis Factor Alpha Inhibits Type I Collagen Synthesis through Repressive CCAAT/Enhancer-Binding Proteins

Greenwel, Patricia, Tanaka, Shizuko, Penkov, Dmitri, Zhang, Wen, Olive, Michelle, Moll, Jonathan, ...

Extracellular matrix (ECM) formation and remodeling are critical processes for proper morphogenesis, organogenesis, and tissue repair. The proinflammatory cytokine tumor necrosis factor alpha...

X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli

Vila-Sanjurjo, Antón, Ridgeway, William K., Seymaner, Veysel, Zhang, Wen, Santoso, Steve, Yu, Kexin, ...

Protein biosynthesis on the ribosome requires accurate reading of the genetic code in mRNA. Two conformational rearrangements in the small ribosomal subunit, a closing of the head and body around the...

Statistical resynchronization and Bayesian detection of periodically expressed genes

Lu, Xin, Zhang, Wen, Qin, Zhaohui S., Kwast, Kurt E., Liu, Jun S.

We propose a periodic–normal mixture (PNM) model to fit transcription profiles of periodically expressed (PE) genes in cell cycle microarray experiments. The model leads to a principled statistical...

Probing microRNAs with microarrays: Tissue specificity and functional inference

BABAK, TOMAS, ZHANG, WEN, MORRIS, QUAID, BLENCOWE, BENJAMIN J., HUGHES, TIMOTHY R.

MicroRNAs (miRNAs) are short, stable, noncoding RNAs involved in post-transcriptional gene silencing via hybridization to mRNA. Few have been thoroughly characterized in any species. Here, we...

Novel Cross Talk of Krüppel-Like Factor 4 and β-Catenin Regulates Normal Intestinal Homeostasis and Tumor Repression†

Zhang, Wen, Chen, Xi, Kato, Yoichi, Evans, Paul M., Yuan, Subo, Yang, Jun, ...

Epithelial cells of the intestinal mucosa undergo a continual process of proliferation, differentiation, and apoptosis which is regulated by multiple signaling pathways. The Wnt/β-catenin pathway...

Zfp206 regulates ES cell gene expression and differentiation

Zhang, Wen, Walker, Emily, Tamplin, Owen J., Rossant, Janet, Stanford, William L., Hughes, Timothy R.

Understanding transcriptional regulation in early developmental stages is fundamental to understanding mammalian development and embryonic stem (ES) cell properties. Expression surveys suggest that...

Distinct functions of homeodomain-containing and homeodomain-less isoforms encoded by homothorax

Noro, Barbara, Culi, Joaquim, McKay, Daniel J., Zhang, Wen, Mann, Richard S.

The homothorax (hth) gene of Drosophila melanogaster is required for executing Hox functions, for head development, and for forming the proximodistal (PD) axis of the appendages. We show that...

Molecular characteristics of non-small cell lung cancer

Nacht, Mariana, Dracheva, Tatiana, Gao, Yuhong, Fujii, Takeshi, Chen, Yidong, Player, Audrey, ...

We used hierarchical clustering to examine gene expression profiles generated by serial analysis of gene expression (SAGE) in a total of nine normal lung epithelial cells and non-small cell lung...

Tumor Necrosis Factor Alpha Inhibits Type I Collagen Synthesis through Repressive CCAAT/Enhancer-Binding Proteins

Greenwel, Patricia, Tanaka, Shizuko, Penkov, Dmitri, Zhang, Wen, Olive, Michelle, Moll, Jonathan, ...

Extracellular matrix (ECM) formation and remodeling are critical processes for proper morphogenesis, organogenesis, and tissue repair. The proinflammatory cytokine tumor necrosis factor alpha...

X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli

Vila-Sanjurjo, Antón, Ridgeway, William K., Seymaner, Veysel, Zhang, Wen, Santoso, Steve, Yu, Kexin, ...

Protein biosynthesis on the ribosome requires accurate reading of the genetic code in mRNA. Two conformational rearrangements in the small ribosomal subunit, a closing of the head and body around the...

Statistical resynchronization and Bayesian detection of periodically expressed genes

Lu, Xin, Zhang, Wen, Qin, Zhaohui S., Kwast, Kurt E., Liu, Jun S.

We propose a periodic–normal mixture (PNM) model to fit transcription profiles of periodically expressed (PE) genes in cell cycle microarray experiments. The model leads to a principled statistical...

Probing microRNAs with microarrays: Tissue specificity and functional inference

BABAK, TOMAS, ZHANG, WEN, MORRIS, QUAID, BLENCOWE, BENJAMIN J., HUGHES, TIMOTHY R.

MicroRNAs (miRNAs) are short, stable, noncoding RNAs involved in post-transcriptional gene silencing via hybridization to mRNA. Few have been thoroughly characterized in any species. Here, we...

Novel Cross Talk of Krüppel-Like Factor 4 and β-Catenin Regulates Normal Intestinal Homeostasis and Tumor Repression†

Zhang, Wen, Chen, Xi, Kato, Yoichi, Evans, Paul M., Yuan, Subo, Yang, Jun, ...

Epithelial cells of the intestinal mucosa undergo a continual process of proliferation, differentiation, and apoptosis which is regulated by multiple signaling pathways. The Wnt/β-catenin pathway...

Distinct functions of homeodomain-containing and homeodomain-less isoforms encoded by homothorax

Noro, Barbara, Culi, Joaquim, McKay, Daniel J., Zhang, Wen, Mann, Richard S.

The homothorax (hth) gene of Drosophila melanogaster is required for executing Hox functions, for head development, and for forming the proximodistal (PD) axis of the appendages. We show that...

Zfp206 regulates ES cell gene expression and differentiation

Zhang, Wen, Walker, Emily, Tamplin, Owen J., Rossant, Janet, Stanford, William L., Hughes, Timothy R.

Understanding transcriptional regulation in early developmental stages is fundamental to understanding mammalian development and embryonic stem (ES) cell properties. Expression surveys suggest that...

Vascular Gene Expression in Nonneoplastic and Malignant Brain

Madden, Stephen L., Cook, Brian P., Nacht, Mariana, Weber, William D., Callahan, Michelle R., Jiang, Yide, ...

Malignant gliomas are uniformly lethal tumors whose morbidity is mediated in large part by the angiogenic response of the brain to the invading tumor. This profound angiogenic response leads to...

Structural basis for mRNA and tRNA positioning on the ribosome

Berk, Veysel, Zhang, Wen, Pai, Raj D., Cate, Jamie H. D.

Protein synthesis requires the accurate positioning of mRNA and tRNA in the peptidyl-tRNA site of the ribosome. Here we describe x-ray crystal structures of the intact bacterial ribosome from...

X-ray fluorescence microscopy reveals large-scale relocalization and extracellular translocation of cellular copper during angiogenesis

Finney, Lydia, Mandava, Suneeta, Ursos, Lyann, Zhang, Wen, Rodi, Diane, Vogt, Stefan, ...

Although copper has been reported to influence numerous proteins known to be important for angiogenesis, the enhanced sensitivity of this developmental process to copper bioavailability has remained...

Cloning of full genome sequence of hepatitis E virus of Shanghai swine isolate using RACE method

Shen, Quan, Zhang, Wen, Cao, Xiangrong, Mou, Jing, Cui, Li, Hua, Xiuguo

Genotype 4 hepatitis E virus (HEV) was reportedly transmitted freely between humans and swine in eastern China. The full-length genomic sequence of Shanghai swine isolate (SH-SW-zs1) recovered from...

Functional coordination of alternative splicing in the mammalian central nervous system

Fagnani, Matthew, Barash, Yoseph, Ip, Joanna Y, Misquitta, Christine, Pan, Qun, Saltzman, Arneet L, ...

A microarray analysis provides new evidence suggesting that specific cellular processes in the mammalian CNS are coordinated at the level of alternative splicing, and that a complex splicing code...

Event-Related Potentials Reveal Differential Brain Regions Implicated in Discounting in Two Tasks

Liam Delaney, Caroline Rawdon, Kevin Denny, Wen Zhang

The way people make decisions about future benefits termed discounting - has important implications for both financial planning and health behaviour. Several theories assume that, when delaying...

Event-related Potentials reveal differential Brain Regions implicated in Discounting in Two Tasks

Liam Delaney, Kevin Denny, Wen Zhang, Caroline Rawdon, Richard AP Roche

The way people make decisions about future benefits – termed discounting - has important implications for both financial planning and health behaviour. Several theories assume that, when delaying...