IMG/M: A data management and analysis system for metagenomes (2008)
Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, ...
Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., ...
Using IMG: Comparative Analysis with the Integrated Microbial Genomes System (2008)
Markowitz, Victor M., Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Szeto, Ernest, ...
Dalevi, Daniel, DeSantis, Todd Z, Fredslund, Jakob, Andersen, Gary L, Markowitz, Victor M, Hugenholtz, Philip
Abstract Background Accurate taxonomy is best maintained if species are arranged as hierarchical groups in phylogenetic trees. This is especially important as trees grow larger as a consequence of a...
An Experimental Metagenome Data Management and Analysis System (2006)
Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Ivanova, Natalia N., Kyrpides, Nikos C., ...
Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System (2006)
Kyrpides, Nikos C., Markowitz, Victor M.
Comparative genome analysis is critical for the effective exploration of a rapidly growing number of complete and draft sequences for microbial genomes. The Integrated Microbial Genomes (IMG) system...
Anthony S. Kosky, Victor M. Markowitz, Ernest Szeto
Scientific databases (ScDBs) are used to archive and retrieve data describing objects of scientific inquiry. Since these ScDBs must provide continuous and efficient access to large communities of...
Facilities For Exploring Molecular Biology Databases On The Web: A Comparative Study (1996)
Victor M. Markowitz, Anthony S. Kosky, Ernest Szeto
this paper, we discuss criteria for evaluating the main facilities required for exploring MBDs on the Web, that is, retrieving and interpreting MBD metadata and data. We apply these criteria in...
Version Management for Scientific Databases (1996)
Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman
. Scientific databases are used to accession objects representing the results of scientific inquiry, such as genes and DNA sequences. These objects must have stable identifiers that can be used as...
An Overview Of The Object Protocol Model (opm) And The Opm Data Management Tools (1995)
In this paper, we overview the Object-Protocol Model (OPM) and a suite of data management tools based on OPM. OPM is a data model that allows specifying database structures and queries in terms of...
An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools (1994)
Victor M. Markowitz, Arie Shoshani
In this overview we briefly describe a collection of tools developed at Lawrence Berkeley Laboratory (LBL) for aiding users in specifying database structures and in querying databases using...
The Object-Protocol Model (1993)
The Object-Protocol Model (OPM) is a data model that supports the specification of complex object and protocol classes. Objects and protocols are qualified in OPM by attributes that are defined over...
The Object-Protocol Model (1993)
The Object-Protocol Model (OPM) is a data model that supports the specification of complex object and protocol classes. Objects and protocols are qualified in OPM by attributes that are defined over...
Victor M. Markowitz, Jun Wang, Weiping Fang
This document describes a database schema design and translation tool called SDT. SDT takes as input Extended Entity-Relationship (EER) schemas and generates schemas for relational database...
The integrated microbial genomes (IMG) system
Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, ...
The integrated microbial genomes (IMG) system is a new data management and analysis platform for microbial genomes provided by the Joint Genome Institute (JGI). IMG contains both draft and complete...
The integrated microbial genomes (IMG) system
Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, ...
The integrated microbial genomes (IMG) system is a new data management and analysis platform for microbial genomes provided by the Joint Genome Institute (JGI). IMG contains both draft and complete...
Dalevi, Daniel, DeSantis, Todd Z, Fredslund, Jakob, Andersen, Gary L, Markowitz, Victor M, Hugenholtz, Philip
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., ...
The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes...
IMG/M: a data management and analysis system for metagenomes
Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, ...
IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data...