Determination of Stromal Signatures in Breast Carcinoma (2005)
Robert B. West, Subbaya Subramanian, Torsten O. Nielsen, Christopher L. Corless, Brian P. Rubin, ...
The authors used two different fibroblastic tumors to identify markers expressed by normal stroma cells (the supporting framework of body tissues and/or tumors), and show that different stromal...
Determination of Stromal Signatures in Breast Carcinoma (2005)
Robert B. West, Subbaya Subramanian, Torsten O. Nielsen, Christopher L. Corless, Brian P. Rubin, ...
Many soft tissue tumors recapitulate features of normal connective tissue. We hypothesize that different types of fibroblastic tumors are representative of different populations of fibroblastic cells...
Caryoscope: An Open Source Java application for viewing microarray data in a genomic context (2004)
Awad, Ihab AB, Rees, Christian A, Hernandez-Boussard, Tina, Ball, Catherine A, Sherlock, Gavin
Abstract Background Microarray-based comparative genome hybridization experiments generate data that can be mapped onto the genome. These data are interpreted more easily when represented graphically...
Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution (2004)
Andrew Fortna, Young Kim, Erik MacLaren, Kriste Marshall, Gretchen Hahn, Lynne Meltesen, ...
This genome-wide analysis reports the major lineage-specific gene copy number changes that have occurred over the past 15 million years of human and great ape evolution.
Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution (2004)
Andrew Fortna, Young Kim, Erik MacLaren, Kriste Marshall, Gretchen Hahn, Lynne Meltesen, ...
Given that gene duplication is a major driving force of evolutionary change and the key mechanism underlying the emergence of new genes and biological processes, this study sought to use a novel...
The Stanford Microarray Database
Sherlock, Gavin, Hernandez-Boussard, Tina, Kasarskis, Andrew, Binkley, Gail, Matese, John C., Dwight, Selina S., ...
The Stanford Microarray Database (SMD) stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. The two...
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
Diehn, Maximilian, Sherlock, Gavin, Binkley, Gail, Jin, Heng, Matese, John C., Hernandez-Boussard, Tina, ...
The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale...
The Stanford Microarray Database: data access and quality assessment tools
Gollub, Jeremy, Ball, Catherine A., Binkley, Gail, Demeter, Janos, Finkelstein, David B., Hebert, Joan M., ...
The Stanford Microarray Database (SMD; http://genome-www.stanford.edu/microarray/) serves as a microarray research database for Stanford investigators and their collaborators. In addition, SMD...
Gene Expression Patterns in Ovarian Carcinomas
Schaner, Marci E., Ross, Douglas T., Ciaravino, Giuseppe, Sørlie, Therese, Troyanskaya, Olga, Diehn, Maximilian, ...
We used DNA microarrays to characterize the global gene expression patterns in surface epithelial cancers of the ovary. We identified groups of genes that distinguished the clear cell subtype from...
Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution
Fortna, Andrew, Kim, Young, MacLaren, Erik, Marshall, Kriste, Hahn, Gretchen, Meltesen, Lynne, ...
Given that gene duplication is a major driving force of evolutionary change and the key mechanism underlying the emergence of new genes and biological processes, this study sought to use a novel...
Caryoscope: An Open Source Java application for viewing microarray data in a genomic context
Awad, Ihab AB, Rees, Christian A, Hernandez-Boussard, Tina, Ball, Catherine A, Sherlock, Gavin
The Stanford Microarray Database accommodates additional microarray platforms and data formats
Ball, Catherine A., Awad, Ihab A. B., Demeter, Janos, Gollub, Jeremy, Hebert, Joan M., Hernandez-Boussard, Tina, ...
The Stanford Microarray Database (SMD) (http://smd.stanford.edu) is a research tool for hundreds of Stanford researchers and their collaborators. In addition, SMD functions as a resource for the...
Determination of Stromal Signatures in Breast Carcinoma
West, Robert B, Nuyten, Dimitry S. A, Subramanian, Subbaya, Nielsen, Torsten O, Corless, Christopher L, Rubin, Brian P, ...
Many soft tissue tumors recapitulate features of normal connective tissue. We hypothesize that different types of fibroblastic tumors are representative of different populations of fibroblastic cells...
Bashyam, Murali D, Bair, Ryan, Kim, Young H, Wang, Pei, Hernandez-Boussard, Tina, Karikari, Collins A, ...
Pancreatic cancer, the fourth leading cause of cancer death in the United States, is frequently associated with the amplification and deletion of specific oncogenes and tumor-suppressor genes (TSGs),...
The Stanford Microarray Database
Sherlock, Gavin, Hernandez-Boussard, Tina, Kasarskis, Andrew, Binkley, Gail, Matese, John C., Dwight, Selina S., ...
The Stanford Microarray Database (SMD) stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. The two...
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
Diehn, Maximilian, Sherlock, Gavin, Binkley, Gail, Jin, Heng, Matese, John C., Hernandez-Boussard, Tina, ...
The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale...
The Stanford Microarray Database: data access and quality assessment tools
Gollub, Jeremy, Ball, Catherine A., Binkley, Gail, Demeter, Janos, Finkelstein, David B., Hebert, Joan M., ...
The Stanford Microarray Database (SMD; http://genome-www.stanford.edu/microarray/) serves as a microarray research database for Stanford investigators and their collaborators. In addition, SMD...
Gene Expression Patterns in Ovarian Carcinomas
Schaner, Marci E., Ross, Douglas T., Ciaravino, Giuseppe, Sørlie, Therese, Troyanskaya, Olga, Diehn, Maximilian, ...
We used DNA microarrays to characterize the global gene expression patterns in surface epithelial cancers of the ovary. We identified groups of genes that distinguished the clear cell subtype from...
Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution
Fortna, Andrew, Kim, Young, MacLaren, Erik, Marshall, Kriste, Hahn, Gretchen, Meltesen, Lynne, ...
Given that gene duplication is a major driving force of evolutionary change and the key mechanism underlying the emergence of new genes and biological processes, this study sought to use a novel...
Caryoscope: An Open Source Java application for viewing microarray data in a genomic context
Awad, Ihab AB, Rees, Christian A, Hernandez-Boussard, Tina, Ball, Catherine A, Sherlock, Gavin
The Stanford Microarray Database accommodates additional microarray platforms and data formats
Ball, Catherine A., Awad, Ihab A. B., Demeter, Janos, Gollub, Jeremy, Hebert, Joan M., Hernandez-Boussard, Tina, ...
The Stanford Microarray Database (SMD) (http://smd.stanford.edu) is a research tool for hundreds of Stanford researchers and their collaborators. In addition, SMD functions as a resource for the...
Determination of Stromal Signatures in Breast Carcinoma
West, Robert B, Nuyten, Dimitry S. A, Subramanian, Subbaya, Nielsen, Torsten O, Corless, Christopher L, Rubin, Brian P, ...
Many soft tissue tumors recapitulate features of normal connective tissue. We hypothesize that different types of fibroblastic tumors are representative of different populations of fibroblastic cells...
Bashyam, Murali D, Bair, Ryan, Kim, Young H, Wang, Pei, Hernandez-Boussard, Tina, Karikari, Collins A, ...
Pancreatic cancer, the fourth leading cause of cancer death in the United States, is frequently associated with the amplification and deletion of specific oncogenes and tumor-suppressor genes (TSGs),...
Demeter, Janos, Beauheim, Catherine, Gollub, Jeremy, Hernandez-Boussard, Tina, Jin, Heng, Maier, Donald, ...
The Stanford Microarray Database (SMD; ) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology....
Gene Expression Patterns and Gene Copy Number Changes in Dermatofibrosarcoma Protuberans
Linn, Sabine C., West, Rob B., Pollack, Jonathan R., Zhu, Shirley, Hernandez-Boussard, Tina, Nielsen, Torsten O., ...
Dermatofibrosarcoma protuberans (DFSP) is an aggressive spindle cell neoplasm. It is associated with the chromosomal translocation, t(17:22), which fuses the COL1A1 and PDGFβ genes. We determined...
The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge
Hernandez-Boussard, Tina, Whirl-Carrillo, Michelle, Hebert, Joan M., Gong, Li, Owen, Ryan, Gong, Mei, ...
PharmGKB is a knowledge base that captures the relationships between drugs, diseases/phenotypes and genes involved in pharmacokinetics (PK) and pharmacodynamics (PD). This information includes...
Genomic Profiling Identifies GATA6 as a Candidate Oncogene Amplified in Pancreatobiliary Cancer
Kwei, Kevin A., Bashyam, Murali D., Kao, Jessica, Ratheesh, Raman, Reddy, Edumakanti C., Kim, Young H., ...
Pancreatobiliary cancers have among the highest mortality rates of any cancer type. Discovering the full spectrum of molecular genetic alterations may suggest new avenues for therapy. To catalogue...