Quantitative phylogenetic assessment of microbial communities in diverse environments (2008)
Von Mering, C., Hugenholtz, P., Raes, J., Tringe, S.G., Doerks, T., Jensen, L.J., ...
Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing (2007)
Eulalio, Anna, Rehwinkel, J., Stricker, M., Huntzinger, Eric, Young, S.F., Doerks, T., ...
microRNAs (miRNAs) silence gene expression by suppressing protein production and/or by promoting mRNA decay. To elucidate how silencing is accomplished, we screened an RNA interference library for...
String 7-recent developments in the integration and prediction of protein interactions (2007)
Mering, C. Von, Jensen, L.J., Kuhn, M., Chaffron, S., Doerks, T., Kruger, B., ...
Information on protein–protein interactions is still mostly limited to a small number of model organisms, and originates from a wide variety of experimental and computational techniques. The...
Stutz, F, Bachi, A, Doerks, T, Braun, I C, Séraphin, B, Wilm, M, ...
Vertebrate TAP and its yeast ortholog Mex67p are involved in the export of messenger RNAs from the nucleus. TAP has also been implicated in the export of simian type D viral RNAs bearing the...
Stutz, F, Bachi, A, Doerks, T, Braun, I C, Séraphin, B, Wilm, M, ...
Vertebrate TAP and its yeast ortholog Mex67p are involved in the export of messenger RNAs from the nucleus. TAP has also been implicated in the export of simian type D viral RNAs bearing the...
Quantitative assessment of protein function prediction from metagenomics shotgun sequences
Harrington, E. D., Singh, A. H., Doerks, T., Letunic, I., Von Mering, C., Jensen, L. J., ...
To assess the potential of protein function prediction in environmental genomics data, we analyzed shotgun sequences from four diverse and complex habitats. Using homology searches as well as...