Fabiana Perocchi, Lars J. Jensen, Julien Gagneur, Uwe Ahting, Christian Von Mering, Peer Bork, ...
Mitochondria carry out specialized functions; compartmentalized, yet integrated into the metabolic and signaling processes of the cell. Although many mitochondrial proteins have been identified,...
Computation of elementary modes: a unifying framework and the new binary approach (2004)
Gagneur, Julien, Klamt, Steffen
Abstract Background Metabolic pathway analysis has been recognized as a central approach to the structural analysis of metabolic networks. The concept of elementary (flux) modes provides a rigorous...
Modular decomposition of protein-protein interaction networks (2004)
Gagneur, Julien, Krause, Roland, Bouwmeester, Tewis, Casari, Georg
Abstract We introduce an algorithmic method, termed modular decomposition, that defines the organization of protein-interaction networks as a hierarchy of nested modules. Modular decomposition...
Computation of Extreme Pathways with Hierarchical Decompositions of (2003)
Introduction Intrinsic hierarchical structure of metabolic networks has been recently revealed [1]. Particular hierarchical decompositions can even present a property of relative independence between...
Modular decomposition of protein-protein interaction networks
Gagneur, Julien, Krause, Roland, Bouwmeester, Tewis, Casari, Georg
This article introduces an algorithmic method, termed modular decomposition, that defines the organization of protein-interaction networks as a hierarchy of nested modules.
Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle
Perocchi, Fabiana, Jensen, Lars J, Gagneur, Julien, Ahting, Uwe, Von Mering, Christian, Bork, Peer, ...
Mitochondria carry out specialized functions; compartmentalized, yet integrated into the metabolic and signaling processes of the cell. Although many mitochondrial proteins have been identified,...
Modular decomposition of protein-protein interaction networks
Gagneur, Julien, Krause, Roland, Bouwmeester, Tewis, Casari, Georg
This article introduces an algorithmic method, termed modular decomposition, that defines the organization of protein-interaction networks as a hierarchy of nested modules.
Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle
Perocchi, Fabiana, Jensen, Lars J, Gagneur, Julien, Ahting, Uwe, Von Mering, Christian, Bork, Peer, ...
Mitochondria carry out specialized functions; compartmentalized, yet integrated into the metabolic and signaling processes of the cell. Although many mitochondrial proteins have been identified,...
4DXpress: a database for cross-species expression pattern comparisons
Haudry, Yannick, Berube, Hugo, Letunic, Ivica, Weeber, Paul-Daniel, Gagneur, Julien, Girardot, Charles, ...
In the major animal model species like mouse, fish or fly, detailed spatial information on gene expression over time can be acquired through whole mount in situ hybridization experiments. In these...