GeneXplorer: an interactive web application for microarray data visualization and analysis (2004)
Rees, Christian A, Demeter, Janos, Matese, John C, Botstein, David, Sherlock, Gavin
Abstract Background When publishing large-scale microarray datasets, it is of great value to create supplemental websites where either the full data, or selected subsets corresponding to figures...
Submission of Microarray Data to Public Repositories (2004)
Catherine A. Ball, Alvis Brazma, Helen Causton, Steve Chervitz, Ron Edgar, Pascal Hingamp, ...
The Microarray Gene Expression Data Society believe that the time is right for journals to require that microarray data be deposited in public repositories, as a condition for publication.
Submission of Microarray Data to Public Repositories (2004)
Catherine A. Ball, Alvis Brazma, Helen Causton, Steve Chervitz, Ron Edgar, Pascal Hingamp, ...
The Stanford Microarray Database (2001)
Gavin Sherlock, Tina Hern, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, ...
The Stanford Microarray Database (SMD) stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. The two...
Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data
Ball, Catherine A., Jin, Heng, Sherlock, Gavin, Weng, Shuai, Matese, John C., Andrada, Rey, ...
Upon the completion of the Saccharomyces cerevisiae genomic sequence in 1996 [Goffeau,A. et al. (1997) Nature, 387, 5], several creative and ambitious projects have been initiated to explore the...
The Stanford Microarray Database
Sherlock, Gavin, Hernandez-Boussard, Tina, Kasarskis, Andrew, Binkley, Gail, Matese, John C., Dwight, Selina S., ...
The Stanford Microarray Database (SMD) stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. The two...
Sørlie, Therese, Perou, Charles M., Tibshirani, Robert, Aas, Turid, Geisler, Stephanie, Johnsen, Hilde, ...
The purpose of this study was to classify breast carcinomas based on variations in gene expression patterns derived from cDNA microarrays and to correlate tumor characteristics to clinical outcome. A...
Whitfield, Michael L., Sherlock, Gavin, Saldanha, Alok J., Murray, John I., Ball, Catherine A., Alexander, Karen E., ...
The genome-wide program of gene expression during the cell division cycle in a human cancer cell line (HeLa) was characterized using cDNA microarrays. Transcripts of >850 genes showed periodic...
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
Diehn, Maximilian, Sherlock, Gavin, Binkley, Gail, Jin, Heng, Matese, John C., Hernandez-Boussard, Tina, ...
The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale...
The Stanford Microarray Database: data access and quality assessment tools
Gollub, Jeremy, Ball, Catherine A., Binkley, Gail, Demeter, Janos, Finkelstein, David B., Hebert, Joan M., ...
The Stanford Microarray Database (SMD; http://genome-www.stanford.edu/microarray/) serves as a microarray research database for Stanford investigators and their collaborators. In addition, SMD...
Submission of Microarray Data to Public Repositories
Ball, Catherine A, Brazma, Alvis, Causton, Helen, Chervitz, Steve, Edgar, Ron, Hingamp, Pascal, ...
The Microarray Gene Expression Data Society believe that the time is right for journals to require that microarray data be deposited in public repositories, as a condition for publication
GeneXplorer: an interactive web application for microarray data visualization and analysis
Rees, Christian A, Demeter, Janos, Matese, John C, Botstein, David, Sherlock, Gavin
The Stanford Microarray Database accommodates additional microarray platforms and data formats
Ball, Catherine A., Awad, Ihab A. B., Demeter, Janos, Gollub, Jeremy, Hebert, Joan M., Hernandez-Boussard, Tina, ...
The Stanford Microarray Database (SMD) (http://smd.stanford.edu) is a research tool for hundreds of Stanford researchers and their collaborators. In addition, SMD functions as a resource for the...
Shah, Preetam H., MacFarlane, Ryan C., Bhattacharya, Dhruva, Matese, John C., Demeter, Janos, Stroup, Suzanne E., ...
Variable phenotypes have been identified for Entamoeba species. Entamoeba histolytica is invasive and causes colitis and liver abscesses but only in ∼10% of infected individuals; 90% remain...
Microarray Data Standards: An Open Letter
Ball, Catherine, Brazma, Alvis, Causton, Helen, Chervitz, Steve, Edgar, Ron, Hingamp, Pascal, ...
Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data
Ball, Catherine A., Jin, Heng, Sherlock, Gavin, Weng, Shuai, Matese, John C., Andrada, Rey, ...
Upon the completion of the Saccharomyces cerevisiae genomic sequence in 1996 [Goffeau,A. et al. (1997) Nature, 387, 5], several creative and ambitious projects have been initiated to explore the...
The Stanford Microarray Database
Sherlock, Gavin, Hernandez-Boussard, Tina, Kasarskis, Andrew, Binkley, Gail, Matese, John C., Dwight, Selina S., ...
The Stanford Microarray Database (SMD) stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. The two...
Sørlie, Therese, Perou, Charles M., Tibshirani, Robert, Aas, Turid, Geisler, Stephanie, Johnsen, Hilde, ...
The purpose of this study was to classify breast carcinomas based on variations in gene expression patterns derived from cDNA microarrays and to correlate tumor characteristics to clinical outcome. A...
Whitfield, Michael L., Sherlock, Gavin, Saldanha, Alok J., Murray, John I., Ball, Catherine A., Alexander, Karen E., ...
The genome-wide program of gene expression during the cell division cycle in a human cancer cell line (HeLa) was characterized using cDNA microarrays. Transcripts of >850 genes showed periodic...
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
Diehn, Maximilian, Sherlock, Gavin, Binkley, Gail, Jin, Heng, Matese, John C., Hernandez-Boussard, Tina, ...
The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale...
The Stanford Microarray Database: data access and quality assessment tools
Gollub, Jeremy, Ball, Catherine A., Binkley, Gail, Demeter, Janos, Finkelstein, David B., Hebert, Joan M., ...
The Stanford Microarray Database (SMD; http://genome-www.stanford.edu/microarray/) serves as a microarray research database for Stanford investigators and their collaborators. In addition, SMD...
Submission of Microarray Data to Public Repositories
Ball, Catherine A, Brazma, Alvis, Causton, Helen, Chervitz, Steve, Edgar, Ron, Hingamp, Pascal, ...
The Microarray Gene Expression Data Society believe that the time is right for journals to require that microarray data be deposited in public repositories, as a condition for publication
GeneXplorer: an interactive web application for microarray data visualization and analysis
Rees, Christian A, Demeter, Janos, Matese, John C, Botstein, David, Sherlock, Gavin
The Stanford Microarray Database accommodates additional microarray platforms and data formats
Ball, Catherine A., Awad, Ihab A. B., Demeter, Janos, Gollub, Jeremy, Hebert, Joan M., Hernandez-Boussard, Tina, ...
The Stanford Microarray Database (SMD) (http://smd.stanford.edu) is a research tool for hundreds of Stanford researchers and their collaborators. In addition, SMD functions as a resource for the...
Shah, Preetam H., MacFarlane, Ryan C., Bhattacharya, Dhruva, Matese, John C., Demeter, Janos, Stroup, Suzanne E., ...
Variable phenotypes have been identified for Entamoeba species. Entamoeba histolytica is invasive and causes colitis and liver abscesses but only in ∼10% of infected individuals; 90% remain...
Microarray Data Standards: An Open Letter
Ball, Catherine, Brazma, Alvis, Causton, Helen, Chervitz, Steve, Edgar, Ron, Hingamp, Pascal, ...
Demeter, Janos, Beauheim, Catherine, Gollub, Jeremy, Hernandez-Boussard, Tina, Jin, Heng, Maier, Donald, ...
The Stanford Microarray Database (SMD; ) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology....
Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast
Brauer, Matthew J., Huttenhower, Curtis, Airoldi, Edoardo M., Rosenstein, Rachel, Matese, John C., Gresham, David, ...
We studied the relationship between growth rate and genome-wide gene expression, cell cycle progression, and glucose metabolism in 36 steady-state continuous cultures limited by one of six different...