Ji He

Publication List Details

Period

2000 - 2008

Number

39

Co-Authors

Genome-wide identification of microsatellites in white clover (Trifolium repensL.) using FIASCO and phpSSRMiner (2008)

Zhang, Yan, He, Ji, Zhao, Patrick X, Bouton, Joseph H, Monteros, Maria J

Abstract Background Allotetraploid white clover ( Trifolium repens L.) is an important forage legume widely cultivated in most temperate regions. Only a small number of microsatellite markers are...

Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages (2008)

Mian, MA Rouf, Zhang, Yan, Wang, Zeng-Yu, Zhang, Ji-Yi, Cheng, Xiaofei, Chen, Lei, ...

Abstract Background Tall fescue ( Festuca arundinacea Schreb) is a major cool season forage and turf grass species grown in the temperate regions of the world. In this paper we report the generation...

Analysis of cDNA libraries from developing seeds of guar (Cyamopsis tetragonoloba(L.) Taub) (2007)

Naoumkina, Marina, Torres-Jerez, Ivone, Allen, Stacy, He, Ji, Zhao, Patrick X, Dixon, Richard A, ...

Abstract Background Guar, Cyamopsis tetragonoloba (L.) Taub, is a member of the Leguminosae ( Fabaceae ) family and is economically the most important of the four species in the genus. The endosperm...

A first step in understanding an invasive weed through its genes: an EST analysis of invasive Centaurea maculosa (2007)

Broz, Amanda K, Broeckling, Corey D, He, Ji, Dai, Xinbin, Zhao, Patrick X, Vivanco, Jorge M

Abstract Background The economic and biological implications of plant invasion are overwhelming; however, the processes by which plants become successful invaders are not well understood. Limited...

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results (2007)

He, Ji, Dai, Xinbin, Zhao, Xuechun

Abstract Background BLAST searches are widely used for sequence alignment. The search results are commonly adopted for various functional and comparative genomics tasks such as annotating unknown...

Kenneth J. Turner and Ji He. Formally-Based Design Evaluation (extended (2004)

Tiziana Margaria, Thomas F. Melham, Kenneth J. Turner, Ji He

This paper investigates specification, verification and test generation for synchronous and asynchronous circuits. The approach is called DILL (Digital Logic in LOTOS). DILL models are discussed for...

ART-C: A Neural Architecture for (2004)

Ji He, Ah-hwee Tan, Chew-lim Tan

This paper proposes a novel ART-based neural architecture known as ART-C (ART under Constraints) that performs online clustering of pattern sequences subject to the constraints on the recognition...

Modified ART 2A Growing Network Capable of (2004)

Ji He, Ah-hwee Tan, Chew-lim Tan, Senior Member

This paper introduces the Adaptive Resonance Theory under Constraint (ART-C 2A) learning paradigm based on ART 2A, which is capable of generating a user-defined number of recognition nodes through...

Information Retrieval and Clustering W. Wu and H. Xiong (Eds.) pp. -- - -- c (2004)

W. Wu, Ji He, Ah-hwee Tan, Chew-lim Tan

Contents 1 Introduction 2 2 Clustering Process: A Brief Review 3 2.1 Pattern Representation, Feature Selection and Feature Extraction . 3 2.2 Pattern Proximity Measure . . . . . . . . . . . . . . . ....

Initialization of Cluster Refinement Algorithms: (2004)

Ji He, Man Lan, Chew-lim Tan, Sam-yuan Sung, Hwee-boon Low

Various iterative refinement clustering methods are dependent on the initial state of the model and are capable of obtaining one of their local optima only. Since the task of identifying the global...

A Comparative Study on (2004)

Ji He, Ah-hwee Tan, Chew-lim Tan

This paper reports our comparative evaluation of three machine learning methods on Chinese text categorization. Whereas a wide range of methods have been applied to English text categorization,...

Unsupervised Learning for Document Classification: Feasibility, Limitation, and the Bottom Line (2004)

Ji He, Chew-lim Tan, Hwee-boon Low, Dan Shen

While unsupervised learning methods are usually proposed to handle document clustering, in the literature, there exist practices that apply these methods to document classification as well. This...

Machine Learning Methods for (2004)

Ji He, Ah-hwee Tan

This paper reports our evaluation of k Nearest Neighbor (kNN), Support Vector Machines (SVM), and Adaptive Resonance Associative Map (ARAM) on Chinese web page classification.

On Machine Learning Methods for Chinese Document Categorization (2003)

Ji He, Ah-hwee Tan, Chew-lim Tan

This paper reports our comparative evaluation of three machine learning methods, namely k Nearest Neighbor (kNN), Support Vector Machines (SVM), and Adaptive Resonance Associative Map(ARAM) for...

Self-organizing Neural Networks for Efficient Clustering of Gene Expression Data (2003)

Ji He, Chew-lim Tan

Clustering of gene expression patterns is of great value for the understanding of the various molecular biological processes. While a number of algorithms have been applied to gene clustering, there...

Machine Learning Methods for (2002)

Ji He, Ah-hwee Tan, Chew-lira Tan

This paper reports our evaluation of k Nearest Neighbor (kNN), Support Vector Machines (SVM), and Adap- tive Resonance Associative Map (ARAM) on Chinese web page clas- siftcation. Benchmark...

On Quantitative Evaluation of Clustering Systems (2002)

W. Wu, Ji He, Ah-hwee Tan, Chew-lim Tan

Contents 1 Introduction 2 2 Clustering Process: A Brief Review 3 2.1 Pattern Representation, Feature Selection and Feature Extraction . 3 2.2 Pattern Proximity Measure . . . . . . . . . . . . . . . ....

ART-C: A Neural Architecture for Self-Organization Under Constraints (2002)

Ji He, Ah-hwee Tan, Chew-lim Tan

This paper proposes a novel ART-based neural architecture known as ART-C (ART under Constraints) that performs online clustering of pattern sequences subject to the constraints on the recognition...

On Machine Learning Methods for Chinese Document Categorization (2002)

Ji He, Ah-hwee Tan

This paper reports our comparative evaluation of three machine learning methods, namely k Nearest Neighbor (kNN), Support Vector Machines (SVM), and Adaptive Resonance Associative Map (ARAM) for...

Machine Learning Methods for Chinese Web Page Categorization (2002)

Ji He, Ah-hwee Tan

This paper reports our evaluation of k Nearest Neighbor (kNN), Support Vector Machines (SVM), and Adaptive Resonance Associative Map (ARAM) on Chinese web page classification.

A Comparative Study on Chinese Text Categorization Methods (2002)

Ji He, Ah-hwee Tan, Chew-lim Tan

This paper reports our comparative evaluation of three machine learning methods on Chinese text categorization. Whereas a wide range of methods have been applied to English text categorization,...

Protocol-Inspired Hardware Testing (2002)

Sarolta Dibuz, Katalin Tarnay, Proc Testing, Ji He, Kenneth J. Turner

The relevance of protocol conformance testing techniques to hardware testing is discussed. It is shown that the ioconf (input-output conformance) approach used in protocol testing can be applied to...

Machine Learning Methods for Chinese Web Page Categorization (2000)

Ji He, Ah-hwee Tan, Chew-lim Tan

This paper reports our evaluation of k Nearest Neighbor #kNN#, Support Vector Machines #SVM#, and Adaptive Resonance Associative Map #ARAM# on Chinese web page classi #cation. Benchmark experiments...

A Comparative Study on Chinese Text Categorization Methods (2000)

Ji He, Ah-hwee Tan, Chew-lim Tan

. This paper reports our comparativeevaluation of three machine learning methods on Chinese text categorization. Whereas a wide range of methods have been applied to English text categorization,...

A Comparative Study on Chinese Text Categorization Methods (2000)

Ji He, Ah-hwee Tan

This paper reports our comparative evaluation of three machine learning methods on Chinese text categorization. Whereas a wide range of methods have been applied to English text categorization,...

Modelling and Verifying Synchronous Circuits in (2000)

Ji He, Kenneth J. Turner, Stirling Fk La

This report investigates modelling and verifying synchronous circuits in DILL (Digital Logic in LOTOS). The synchronous circuit model used here is quite similar to the classical one exploited in...

Specification and Verification of Synchronous Hardware using (2000)

Ji He, Kenneth J. Turner

This paper investigates specification and verification of synchronous circuits using DILL (Digital Logic in LOTOS). After an overview of the DILL approach, the paper focuses on the characteristics of...

Timed DILL: Digital Logic in LOTOS (1970)

Ji He, Kenneth J. Turner

A timed extension to DILL (DIgital Logic in LOTOS) is discussed. The extension is based on ETLOTOS (Enhanced Timed LOTOS) and is used to specify timed digital logic. The approach places timing...

Extended DILL: Digital Logic in LOTOS (1970)

Ji He, Kenneth J. Turner

DILL (Digital Logic in LOTOS) is a language and an approach to specify digital logic in LOTOS; the initial version of DILL was developed in 1993 at Stirling. This technical report investigates...

Modelling and Verifying Synchronous Circuits in (1970)

Ji He, Kenneth J. Turner

This report investigates modelling and verifying synchronous circuits in DILL (Digital Logic in LOTOS). The synchronous circuit model used here is quite similar to the classical one exploited in...

Specification and Verification of Synchronous Hardware using LOTOS (1970)

Ji He, Kenneth J. Turner

: This paper investigates specification and verification of synchronous circuits using DILL (Digital Logic in LOTOS). After an overview of the DILL approach, the paper focuses on the characteristics...

Verifying and Testing Asynchronous Circuits using LOTOS (1970)

Ji He, Kenneth J. Turner

It is shown howDILL (Digital Logic in LOTOS) can be used to specify,verify and test asynchronous hardware designs. Asynchronous (unclocked) circuits are a topic of active research in the hardware...

Formal Specification and Analysis of Digital Hardware Circuits in LOTOS (1970)

Ji He

The thesis discusses using ISO standard formal language LOTOS (Language of Temporal Ordering Specification) for formally specifying and analysing digital circuits. The study serves two-fold: it...

A new systematic computational approach to predicting target genes of transcription factors

Dai, Xinbin, He, Ji, Zhao, Xuechun

Identifying transcription factor target genes (TFTGs) is a vital step towards understanding regulatory mechanisms of gene expression. Methods for the de novo identification of TFTGs are generally...