Ulitsky, Igor, Gat-Viks, Irit, Shamir, Ron
Abstract MetaReg http://acgt.cs.tau.ac.il/metareg/application.html is a computational tool that models cellular networks and integrates experimental results with such models. MetaReg represents...
Modeling and Analysis of Heterogeneous Regulation in (2004)
Irit Gat-viks, Amos Tanay, Ron Shamir
In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our approach is to build an initial...
A Global View of the Selection Forces in the Evolution of Yeast Cis-Regulation
Tanay, Amos, Gat-Viks, Irit, Shamir, Ron
The interaction between transcription factors and their DNA binding sites is key to understanding gene regulation. By performing a genome-wide study of the evolutionary dynamics in yeast promoters,...
A Global View of the Selection Forces in the Evolution of Yeast Cis-Regulation
Tanay, Amos, Gat-Viks, Irit, Shamir, Ron
The interaction between transcription factors and their DNA binding sites is key to understanding gene regulation. By performing a genome-wide study of the evolutionary dynamics in yeast promoters,...
Refinement and expansion of signaling pathways: The osmotic response network in yeast
The analysis of large-scale genome-wide experiments carries the promise of dramatically broadening our understanding on biological networks. The challenge of systematic integration of experimental...
Ulitsky, Igor, Gat-Viks, Irit, Shamir, Ron
A new computational tool is presented that allows the integration of high-throughput experimental results with the probabilistic modeling of previously obtained information about cellular systems....