IMG/M: A data management and analysis system for metagenomes (2008)
Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, ...
Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., ...
Using IMG: Comparative Analysis with the Integrated Microbial Genomes System (2008)
Markowitz, Victor M., Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Szeto, Ernest, ...
Gu, Shengyin, Anderson, Iain, Kunin, Victor, Cipriano, Michael, Minovitsky, Simon, Weber, Gunther, ...
Summary: We describe a general multiplatform exploratory tool called TreeQ-Vista, designed for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic...
Genome Sequence and Analysis of the Soil Cellulolytic Actinomycete Thermobifida fusca (2007)
Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Land, Miriam, DiBartolo, Genevieve, ...
Thermobifida fusca is a moderately thermophilic soil bacterium that belongs to Actinobacteria. 3 It is a major degrader of plant cell walls and has been used as a model organism for the study of 4...
Maeder, Dennis L., Anderson, Iain, Brettin, Thomas S., Bruce, David C., Gilna, Paul, Han, Cliff S., ...
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis (2005)
Anderson, Iain, Sorokin, Alexei, Kapatral, Vinayak, Reznik, Gary, Bhattacharya, Anamitra, Mikhailova, Natalia, ...
Genome features of the Bacillus cereus group genomes (representative strains of Bacillus cereus, Bacillus anthracis and Bacillus thuringiensis sub spp israelensis) were analyzed and compared with the...
Algorithms For Approximation IV. Proceedings of the 2001 International Symposium (2003)
Levesley, Jeremy, Anderson, Iain, Mason, John C.
The Final Proceedings for Algorithms for Approximation IV (A4A4), 16 July 2001-20 July 2001, a multidisciplinary conference addressing many areas of interest to the Air Force. Of primary interest are...
A study of the dynamic cutting characteristics of roadheader cutting heads /--by I. Anderson. (1991)
Thesis (Ph. D.)--University of Newcastle upon Tyne, 1991.
Cysteinyl-tRNA synthetase is not essential for viability of the archaeon Methanococcus maripaludis
Stathopoulos, Constantinos, Kim, Wonduck, Li, Tong, Anderson, Iain, Deutsch, Britta, Palioura, Sotiria, ...
The methanogenic archaea Methanocaldococcus jannaschii and Methanothermobacter thermautotrophicus contain a dual-specificity prolyl-tRNA synthetase (ProCysRS) that accurately forms both prolyl-tRNA...
The genome sequence of the facultative intracellular pathogen Brucella melitensis
DelVecchio, Vito G., Kapatral, Vinayak, Redkar, Rajendra J., Patra, Guy, Mujer, Cesar, Los, Tamara, ...
Brucella melitensis is a facultative intracellular bacterial pathogen that causes abortion in goats and sheep and Malta fever in humans. The genome of B. melitensis strain 16M was sequenced and found...
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains
Bhattacharyya, Anamitra, Stilwagen, Stephanie, Ivanova, Natalia, D'Souza, Mark, Bernal, Axel, Lykidis, Athanasios, ...
Xylella fastidiosa (Xf) causes wilt disease in plants and is responsible for major economic and crop losses globally. Owing to the public importance of this phytopathogen we embarked on a comparative...
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586
Kapatral, Vinayak, Anderson, Iain, Ivanova, Natalia, Reznik, Gary, Los, Tamara, Lykidis, Athanasios, ...
We present a complete DNA sequence and metabolic analysis of the dominant oral bacterium Fusobacterium nucleatum. Although not considered a major dental pathogen on its own, this anaerobe facilitates...
Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter
Jenkins, Cheryl, Samudrala, Ram, Anderson, Iain, Hedlund, Brian P., Petroni, Giulio, Michailova, Natasha, ...
Tubulins, the protein constituents of the microtubule cytoskeleton, are present in all known eukaryotes but have never been found in the Bacteria or Archaea. Here we report the presence of two...
The ERGOTM genome analysis and discovery system
Overbeek, Ross, Larsen, Niels, Walunas, Theresa, D'Souza, Mark, Pusch, Gordon, Selkov, Eugene, ...
The ERGOTM (http://ergo.integratedgenomics.com/ERGO/) genome analysis and discovery suite is an integration of biological data from genomics, biochemistry, high-throughput expression profiling,...
Bhattacharyya, Anamitra, Stilwagen, Stephanie, Reznik, Gary, Feil, Helene, Feil, William S., Anderson, Iain, ...
Draft sequencing is a rapid and efficient method for determining the near-complete sequence of microbial genomes. Here we report a comparative analysis of one complete and two draft genome sequences...
Kapatral, Vinayak, Ivanova, Natalia, Anderson, Iain, Reznik, Gary, Bhattacharyya, Anamitra, Gardner, Warren L., ...
We present the draft genome sequence and its analysis for Fusobacterium nucleatum sub spp. vincentii (FNV), and compare that genome with F. nucleatum ATCC 25586 (FN). A total of 441 FNV open reading...
The integrated microbial genomes (IMG) system
Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, ...
The integrated microbial genomes (IMG) system is a new data management and analysis platform for microbial genomes provided by the Joint Genome Institute (JGI). IMG contains both draft and complete...
Cysteinyl-tRNA synthetase is not essential for viability of the archaeon Methanococcus maripaludis
Stathopoulos, Constantinos, Kim, Wonduck, Li, Tong, Anderson, Iain, Deutsch, Britta, Palioura, Sotiria, ...
The methanogenic archaea Methanocaldococcus jannaschii and Methanothermobacter thermautotrophicus contain a dual-specificity prolyl-tRNA synthetase (ProCysRS) that accurately forms both prolyl-tRNA...
The genome sequence of the facultative intracellular pathogen Brucella melitensis
DelVecchio, Vito G., Kapatral, Vinayak, Redkar, Rajendra J., Patra, Guy, Mujer, Cesar, Los, Tamara, ...
Brucella melitensis is a facultative intracellular bacterial pathogen that causes abortion in goats and sheep and Malta fever in humans. The genome of B. melitensis strain 16M was sequenced and found...
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains
Bhattacharyya, Anamitra, Stilwagen, Stephanie, Ivanova, Natalia, D'Souza, Mark, Bernal, Axel, Lykidis, Athanasios, ...
Xylella fastidiosa (Xf) causes wilt disease in plants and is responsible for major economic and crop losses globally. Owing to the public importance of this phytopathogen we embarked on a comparative...
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586
Kapatral, Vinayak, Anderson, Iain, Ivanova, Natalia, Reznik, Gary, Los, Tamara, Lykidis, Athanasios, ...
We present a complete DNA sequence and metabolic analysis of the dominant oral bacterium Fusobacterium nucleatum. Although not considered a major dental pathogen on its own, this anaerobe facilitates...
Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter
Jenkins, Cheryl, Samudrala, Ram, Anderson, Iain, Hedlund, Brian P., Petroni, Giulio, Michailova, Natasha, ...
Tubulins, the protein constituents of the microtubule cytoskeleton, are present in all known eukaryotes but have never been found in the Bacteria or Archaea. Here we report the presence of two...
The ERGOTM genome analysis and discovery system
Overbeek, Ross, Larsen, Niels, Walunas, Theresa, D'Souza, Mark, Pusch, Gordon, Selkov, Eugene, ...
The ERGOTM (http://ergo.integratedgenomics.com/ERGO/) genome analysis and discovery suite is an integration of biological data from genomics, biochemistry, high-throughput expression profiling,...
Bhattacharyya, Anamitra, Stilwagen, Stephanie, Reznik, Gary, Feil, Helene, Feil, William S., Anderson, Iain, ...
Draft sequencing is a rapid and efficient method for determining the near-complete sequence of microbial genomes. Here we report a comparative analysis of one complete and two draft genome sequences...
Kapatral, Vinayak, Ivanova, Natalia, Anderson, Iain, Reznik, Gary, Bhattacharyya, Anamitra, Gardner, Warren L., ...
We present the draft genome sequence and its analysis for Fusobacterium nucleatum sub spp. vincentii (FNV), and compare that genome with F. nucleatum ATCC 25586 (FN). A total of 441 FNV open reading...
The integrated microbial genomes (IMG) system
Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, ...
The integrated microbial genomes (IMG) system is a new data management and analysis platform for microbial genomes provided by the Joint Genome Institute (JGI). IMG contains both draft and complete...
Maeder, Dennis L., Anderson, Iain, Brettin, Thomas S., Bruce, David C., Gilna, Paul, Han, Cliff S., ...
We report here a comparative analysis of the genome sequence of Methanosarcina barkeri with those of Methanosarcina acetivorans and Methanosarcina mazei. The genome of M. barkeri is distinguished by...
Maeder, Dennis L., Anderson, Iain, Brettin, Thomas S., Bruce, David C., Gilna, Paul, Han, Cliff S., ...
Genome Sequence and Analysis of the Soil Cellulolytic Actinomycete Thermobifida fusca YX▿
Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Land, Miriam, DiBartolo, Genevieve, ...
Thermobifida fusca is a moderately thermophilic soil bacterium that belongs to Actinobacteria. It is a major degrader of plant cell walls and has been used as a model organism for the study of...
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., ...
The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes...
IMG/M: a data management and analysis system for metagenomes
Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, ...
IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data...
Anderson, Iain, Rodriguez, Jason, Susanti, Dwi, Porat, Iris, Reich, Claudia, Ulrich, Luke E., ...
We report the complete genome of Thermofilum pendens, a deeply branching, hyperthermophilic member of the order Thermoproteales in the archaeal kingdom Crenarchaeota. T. pendens is a...