Hongzhe Li

Publication List Details

Period

2000 - 9999

Number

29

Co-Authors

A Comparison of Some Robust Procedures for Estimating a Linear Discriminant Function, (9999)

Li, Hongzhe

A number of methods have been suggested for robustly estimating a linear discriminant function. These include substitution of robust estimates for the mean and covariance matrix and methods which...

A Role for Endogenous and Radiation-Induced DNA Double-Strand Breaks in p53-Dependent Apoptosis during Cortical Neurogenesis (2008)

Hongzhe Li, Ninning Liu, Grace K. Rajendran, Thomas J. Gernon, Jason K. Rockhill, Jeffrey L. Schwartz, ...

Li, H., Liu, N., Rajendran, G. K., Gernon, T. J., Rockhill, J. K., Schwartz, J. L. and Gu, Y. A Role for Endogenous and Radiation-Induced DNA Double-Strand Breaks in p53-Dependent Apoptosis during...

A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data (2008)

Wei, Zhi, Li, Hongzhe

Microarray time course (MTC) gene expression data are commonly collected to study the dynamic nature of biological processes. One important problem is to identify genes that show different expression...

SirT1 modulates the estrogen–insulin-like growth factor-1 signaling for postnatal development of mammary gland in mice (2007)

Li, Hongzhe, Rajendran, Grace K, Liu, Ninning, Ware, Carol, Rubin, Brian P, Gu, Yansong

Abstract Introduction Estrogen and insulin-like growth factor-1 (IGF-1) play important roles in mammary gland development and breast cancer. SirT1 is a highly conserved protein deacetylase that can...

Functional Empirical Bayes Methods for Identifying Genes with Different Time-course Expression Profiles (2004)

Hong, Fangxin, Li, Hongzhe

Time course studies of gene expression are essential in biomedical research to understand biological phenomena that evolve in a temporal fashion. Microarray technology makes it possible to study...

Partial Cox Regression Analysis for High-Dimensional Microarray Gene Expression Data (2004)

Li, Hongzhe, Gui, Jiang

An important application of microarray technology is to predict various clinical phenotypes based on the gene expression profile. Success has been demonstrated in molecular classification of cancer...

Penalized Cox Regression Analysis in the High-Dimensional and Low-sample Size Settings, with Applications to Mi-croarray Gene Expression Data (2004)

Gui, Jiang, Li, Hongzhe

An important application of microarray technology is to relate gene expression profiles to various clinical phenotypes of patients. Success has been demonstrated in molecular classification of cancer...

Dimension Reduction Methods for Microarrays with Application to Censored Survival Data (2004)

Li, Lexin, Li, Hongzhe

Recent research has shown that gene expression profiles can potentially be used for predicting phenotypes such as cancer types and survival time in biomedical research. Microarray technology which...

A Hidden Markov Modeling Approach for Admixture Mapping Based on Case-Control Haplotype Data (2003)

Zhang, Chun, Chen, Kun, Seldin, Michael F, Li, Hongzhe

Admixture mapping is potentially a powerful method for mapping genes for complex human diseases, when the disease frequency due to a particular disease susceptible gene is different between founding...

Ascertainment-Adjusted Maximum Likelihood Estimation for the Additive Genetic Gamma Frailty Model (2003)

Sun, Wanlong, Li, Hongzhe

The additive genetic gamma frailty model has been proposed for genetic linkage analysis for complex diseases to account for variable age of onset and possible covariates effects. To avoid...

An additive genetic gamma frailty model for two-locus linkage analysis using sibship age of onset data (2002)

Zhong, Xiaoyun, Li, Hongzhe

Complex human diseases are often due to multiple disease genes with variable age of onset, as well as both genetic and environmental risk factors. In order to simultaneously consider two possible...

An additive genetic gamma frailty model for two-locus linkage analysis using sibship age of onset data (2002)

Zhong, Xiaoyun, Li, Hongzhe

Complex human diseases are often due to multiple disease genes with variable age of onset, as well as both genetic and environmental risk factors. In order to simultaneously consider two possible...

An additive genetic gamma frailty model for two-locus linkage analysis using sibship age of onset data (2002)

Zhong, Xiaoyun, Li, Hongzhe

Complex human diseases are often due to multiple disease genes with variable age of onset, as well as both genetic and environmental risk factors. In order to simultaneously consider two possible...

An additive genetic gamma frailty model for two-locus linkage analysis using sibship age of onset data (2002)

Zhong, Xiaoyun, Li, Hongzhe

Complex human diseases are often due to multiple disease genes with variable age of onset, as well as both genetic and environmental risk factors. In order to simultaneously consider two possible...

Kernel Cox Regression Models For Linking Gene (2002)

Hongzhe Li, Yihui Luan

this paper is to develop new statistical methods for relating gene expression profiles to censored survival data such as time to cancer recurrence or death. From the statistical point of view, one...

Cluster-Rasch models for microarray gene expression data (2001)

Li, Hongzhe, Hong, Fangxin

Abstract Background We propose two different formulations of the Rasch statistical models to the problem of relating gene expression profiles to the phenotypes. One formulation allows us to...

Computing the Cox Model for Case Cohort Designs (2000)

Terry M. Therneau, Hongzhe Li

Prentice #9# proposed a case-cohort design as an e#cient subsampling mechanism for survival studies. Several other authors have expanded on these ideas to create a family of related sampling plans,...

Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping

Seldin, Michael F., Morii, Takanobu, Collins-Schramm, Heather E., Chima, Bill, Kittles, Rick, Criswell, Lindsey A., ...

Theoretically, markers that distinguish European from West African ancestry can be used to examine the origin of chromosomal segments in individual African Americans. In this study, putative...

AAA ATPases regulate membrane association of yeast oxysterol binding proteins and sterol metabolism

Wang, Penghua, Zhang, Yong, Li, Hongzhe, Chieu, Hai Kee, Munn, Alan L, Yang, Hongyuan

The yeast genome encodes seven oxysterol binding protein homologs, Osh1p–Osh7p, which have been implicated in regulating intracellular lipid and vesicular transport. Here, we show that both Osh6p...

Ethnic-Difference Markers for Use in Mapping by Admixture Linkage Disequilibrium

Collins-Schramm, Heather E., Phillips, Carolyn M., Operario, Darwin J., Lee, Jane S., Weber, James L., Hanson, Robert L., ...

Mapping by admixture linkage disequilibrium (MALD) is a potentially powerful technique for the mapping of complex genetic diseases. The practical requirements of this method include (a) a set of...

Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping

Seldin, Michael F., Morii, Takanobu, Collins-Schramm, Heather E., Chima, Bill, Kittles, Rick, Criswell, Lindsey A., ...

Theoretically, markers that distinguish European from West African ancestry can be used to examine the origin of chromosomal segments in individual African Americans. In this study, putative...

AAA ATPases regulate membrane association of yeast oxysterol binding proteins and sterol metabolism

Wang, Penghua, Zhang, Yong, Li, Hongzhe, Chieu, Hai Kee, Munn, Alan L, Yang, Hongyuan

The yeast genome encodes seven oxysterol binding protein homologs, Osh1p–Osh7p, which have been implicated in regulating intracellular lipid and vesicular transport. Here, we show that both Osh6p...

An additive genetic gamma frailty model for two-locus linkage analysis using sibship age of onset data

Xiaoyun Zhong, Hongzhe Li

Complex human diseases are often due to multiple disease genes with variable age of onset, as well as both genetic and environmental risk factors. In order to simultaneously consider two possible...