The RAST Server: Rapid Annotations using Subsystems Technology (2008)
Aziz, Ramy K, Bartels, Daniela, Best, Aaron A, DeJongh, Matthew, Disz, Terrence, Edwards, Robert A, ...
Abstract Background The number of prokaryotic genome sequences becoming available is growing steadily and is growing faster than our ability to accurately annotate them. Description We describe a...
Evolution of eukaryotic transcription : insights from the genome of Giardia lamblia (2004)
Best, Aaron A., Morrison, Hilary G., McArthur, Andrew G., Sogin, Mitchell L., Olsen, Gary J.
Author Posting. © Cold Spring Harbor Laboratory Press, 2004. This article is posted here by permission of Cold Spring Harbor Laboratory Press for personal use, not for redistribution. The definitive...
Evolution of eukaryotic transcription : insights from the genome of Giardia lamblia (2004)
Best, Aaron A., Morrison, Hilary G., McArthur, Andrew G., Sogin, Mitchell L., Olsen, Gary J.
Author Posting. © Cold Spring Harbor Laboratory Press, 2004. This article is posted here by permission of Cold Spring Harbor Laboratory Press for personal use, not for redistribution. The definitive...
Use of 16S Ribosomal RNA Sequences to Infer Relationships among Archaebacteria. (2002)
We have increased the amount of 16S ribosomal RNA (rRNA) sequence data that can be gathered by dideoxynucleotide-terminated sequencing from rRNA-specific primers with reverse transcriptase. We have...
CRITICA: Coding Region Identification Tool Invoking Comparative Analysis (1999)
Jonathan H. Badger, Gary J. Olsen
Gene recognition is essential to understanding existing and future DNA sequence data. CRITICA (Coding Region Identification Tool Invoking Comparative Analysis) is a suite of programs for identifying...
Applied cost-outcome analysis for mental health management. (1983)
Master of Public Health;
Applied cost-outcome analysis for mental health management / (1983)
Thesis (M.S.)--Dept. of Family and Community Medicine, University of Utah, 1983.
Graham, David E., Overbeek, Ross, Olsen, Gary J., Woese, Carl R.
Comparisons of complete genome sequences allow the most objective and comprehensive descriptions possible of a lineage's evolution. This communication uses the completed genomes from four major...
Haney, Paul J., Badger, Jonathan H., Buldak, Gerald L., Reich, Claudia I., Woese, Carl R., Olsen, Gary J.
The genome sequence of the extremely thermophilic archaeon Methanococcus jannaschii provides a wealth of data on proteins from a thermophile. In this paper, sequences of 115 proteins from M....
The RDP-II (Ribosomal Database Project)
Maidak, Bonnie L., Cole, James R., Lilburn, Timothy G., Parker, Charles T., Saxman, Paul R., Farris, Ryan J., ...
The Ribosomal Database Project (RDP-II), previously described by Maidak et al. [Nucleic Acids Res. (2000), 28, 173–174], continued during the past year to add new rRNA sequences to the aligned data...
McCloskey, James A., Graham, David E., Zhou, Shaolian, Crain, Pamela F., Ibba, Michael, Konisky, Jordan, ...
Post-transcriptional modifications in archaeal RNA are known to be phylogenetically distinct but relatively little is known of tRNA from the Methanococci, a lineage of methanogenic marine euryarchaea...
Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process
Woese, Carl R., Olsen, Gary J., Ibba, Michael, Söll, Dieter
The aminoacyl-tRNA synthetases (AARSs) and their relationship to the genetic code are examined from the evolutionary perspective. Despite a loose correlation between codon assignments and AARS...
The RDP (Ribosomal Database Project) continues
Maidak, Bonnie L., Cole, James R., Lilburn, Timothy G., Parker Jr, Charles T., Saxman, Paul R., Stredwick, Jason M., ...
The Ribosomal Database Project (RDP-II), previously described by Maidak et al., continued during the past year to add new rRNA sequences to the aligned data and to improve the analysis commands....
The Ribosomal Database Project
Olsen, Gary J., Overbeek, Ross, Larsen, Niels, Marsh, Terry L., McCaughey, Michael J., Maciukenas, Michael A., ...
The Ribosomal Database Project (RDP) compiles ribosomal sequences and related data, and redistributes them in aligned and phylogenetically ordered form to its user community. It also offers various...
Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia
Best, Aaron A., Morrison, Hilary G., McArthur, Andrew G., Sogin, Mitchell L., Olsen, Gary J.
The Giardia lamblia genome sequencing project affords us a unique opportunity to conduct comparative analyses of core cellular systems between early and late-diverging eukaryotes on a genome-wide...
Graham, David E., Overbeek, Ross, Olsen, Gary J., Woese, Carl R.
Comparisons of complete genome sequences allow the most objective and comprehensive descriptions possible of a lineage's evolution. This communication uses the completed genomes from four major...
Haney, Paul J., Badger, Jonathan H., Buldak, Gerald L., Reich, Claudia I., Woese, Carl R., Olsen, Gary J.
The genome sequence of the extremely thermophilic archaeon Methanococcus jannaschii provides a wealth of data on proteins from a thermophile. In this paper, sequences of 115 proteins from M....
The RDP-II (Ribosomal Database Project)
Maidak, Bonnie L., Cole, James R., Lilburn, Timothy G., Parker, Charles T., Saxman, Paul R., Farris, Ryan J., ...
The Ribosomal Database Project (RDP-II), previously described by Maidak et al. [Nucleic Acids Res. (2000), 28, 173–174], continued during the past year to add new rRNA sequences to the aligned data...
McCloskey, James A., Graham, David E., Zhou, Shaolian, Crain, Pamela F., Ibba, Michael, Konisky, Jordan, ...
Post-transcriptional modifications in archaeal RNA are known to be phylogenetically distinct but relatively little is known of tRNA from the Methanococci, a lineage of methanogenic marine euryarchaea...
Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process
Woese, Carl R., Olsen, Gary J., Ibba, Michael, Söll, Dieter
The aminoacyl-tRNA synthetases (AARSs) and their relationship to the genetic code are examined from the evolutionary perspective. Despite a loose correlation between codon assignments and AARS...
The RDP (Ribosomal Database Project) continues
Maidak, Bonnie L., Cole, James R., Lilburn, Timothy G., Parker Jr, Charles T., Saxman, Paul R., Stredwick, Jason M., ...
The Ribosomal Database Project (RDP-II), previously described by Maidak et al., continued during the past year to add new rRNA sequences to the aligned data and to improve the analysis commands....
The Ribosomal Database Project
Olsen, Gary J., Overbeek, Ross, Larsen, Niels, Marsh, Terry L., McCaughey, Michael J., Maciukenas, Michael A., ...
The Ribosomal Database Project (RDP) compiles ribosomal sequences and related data, and redistributes them in aligned and phylogenetically ordered form to its user community. It also offers various...
Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia
Best, Aaron A., Morrison, Hilary G., McArthur, Andrew G., Sogin, Mitchell L., Olsen, Gary J.
The Giardia lamblia genome sequencing project affords us a unique opportunity to conduct comparative analyses of core cellular systems between early and late-diverging eukaryotes on a genome-wide...
McNeil, Leslie Klis, Reich, Claudia, Aziz, Ramy K., Bartels, Daniela, Cohoon, Matthew, Disz, Terry, ...
The National Microbial Pathogen Data Resource (NMPDR) () is a National Institute of Allergy and Infections Disease (NIAID)-funded Bioinformatics Resource Center that supports research in selected...
The RAST Server: Rapid Annotations using Subsystems Technology
Aziz, Ramy K, Bartels, Daniela, Best, Aaron A, DeJongh, Matthew, Disz, Terrence, Edwards, Robert A, ...
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes▿
Frank, Jeremy A., Reich, Claudia I., Sharma, Shobha, Weisbaum, Jon S., Wilson, Brenda A., Olsen, Gary J.
rRNA-based studies, which have become the most common method for assessing microbial communities, rely upon faithful amplification of the corresponding genes from the original DNA sample. We report...
Anderson, Iain, Rodriguez, Jason, Susanti, Dwi, Porat, Iris, Reich, Claudia, Ulrich, Luke E., ...
We report the complete genome of Thermofilum pendens, a deeply branching, hyperthermophilic member of the order Thermoproteales in the archaeal kingdom Crenarchaeota. T. pendens is a...