A new protein linear motif benchmark for multiple sequence alignment software (2008)
Perrodou, Emmanuel, Chica, Claudia, Poch, Olivier, Gibson, Toby J, Thompson, Julie D
Abstract Background Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational...
Deshayes, Caroline, Perrodou, Emmanuel, Euphrasie, Daniel, Frapy, Eric, Poch, Olivier, Bifani, Pablo, ...
Abstract Background Computer-assisted analyses have shown that all bacterial genomes contain a small percentage of open reading frames with a frameshift or in-frame stop codon We report here a...
Deshayes, Caroline, Perrodou, Emmanuel, Gallien, Sebastien, Euphrasie, Daniel, Schaeffer, Christine, Van-Dorsselaer, Alain, ...
Abstract Background In silico analysis has shown that all bacterial genomes contain a low percentage of ORFs with undetected frameshifts and in-frame stop codons. These interrupted coding sequences...
Lagueux, Marie, Perrodou, Emmanuel, Levashina, Elena A., Capovilla, Maria, Hoffmann, Jules A.
We show that Drosophila expresses four genes encoding proteins with significant similarities with the thiolester-containing proteins of the complement C3/α2-macroglobulin superfamily. The genes are...
PVF2, a PDGF/VEGF-like growth factor, induces hemocyte proliferation in Drosophila larvae
Munier, Anne-Isabelle, Doucet, Daniel, Perrodou, Emmanuel, Zachary, Daniel, Meister, Marie, Hoffmann, Jules A., ...
Blood cells play a crucial role in both morphogenetic and immunological processes in Drosophila, yet the factors regulating their proliferation remain largely unknown. In order to address this...
ICDS database: interrupted CoDing sequences in prokaryotic genomes
Perrodou, Emmanuel, Deshayes, Caroline, Muller, Jean, Schaeffer, Christine, Van Dorsselaer, Alain, Ripp, Raymond, ...
Unrecognized frameshifts, in-frame stop codons and sequencing errors lead to Interrupted CoDing Sequence (ICDS) that can seriously affect all subsequent steps of functional characterization, from in...
Lagueux, Marie, Perrodou, Emmanuel, Levashina, Elena A., Capovilla, Maria, Hoffmann, Jules A.
We show that Drosophila expresses four genes encoding proteins with significant similarities with the thiolester-containing proteins of the complement C3/α2-macroglobulin superfamily. The genes are...
PVF2, a PDGF/VEGF-like growth factor, induces hemocyte proliferation in Drosophila larvae
Munier, Anne-Isabelle, Doucet, Daniel, Perrodou, Emmanuel, Zachary, Daniel, Meister, Marie, Hoffmann, Jules A., ...
Blood cells play a crucial role in both morphogenetic and immunological processes in Drosophila, yet the factors regulating their proliferation remain largely unknown. In order to address this...
ICDS database: interrupted CoDing sequences in prokaryotic genomes
Perrodou, Emmanuel, Deshayes, Caroline, Muller, Jean, Schaeffer, Christine, Van Dorsselaer, Alain, Ripp, Raymond, ...
Unrecognized frameshifts, in-frame stop codons and sequencing errors lead to Interrupted CoDing Sequence (ICDS) that can seriously affect all subsequent steps of functional characterization, from in...
Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?
Deshayes, Caroline, Perrodou, Emmanuel, Gallien, Sebastien, Euphrasie, Daniel, Schaeffer, Christine, Van-Dorsselaer, Alain, ...
The question of whether bacterial interrupted coding sequences (ICDS) should be individually verified to produce an informative genome sequence is raised after bioinformatic, proteomic and sequencing...