Scientific Commons: Daniel Dalevi

Abstract Background Accurate taxonomy is best maintained if species are arranged as hierarchical groups in phylogenetic trees. This is especially important as trees grow larger as a consequence of a...

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation (2007)

Cvijović, Marija, Dalevi, Daniel, Bilsland, Elizabeth, Kemp, Graham JL, Sunnerhagen, Per

Abstract Background The translational efficiency of an mRNA can be modulated by upstream open reading frames (uORFs) present in certain genes. A uORF can attenuate translation of the main ORF by...

A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity (2006)

Dalevi, Daniel, Dubhashi, Devdatt, Hermansson, Malte

Recently Peres and Shields discovered a new method for estimating the order of a stationary fixed order Markov chain. They showed that the estimator is consistent by proving a threshold result. While...

A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity (2006)

Dalevi, Daniel, Dubhashi, Devdatt, Hermansson, Malte

Recently Peres and Shields discovered a new method for estimating the order of a stationary fixed order Markov chain. They showed that the estimator is consistent by proving a threshold result. While...

A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity (2006)

Dalevi, Daniel, Dubhashi, Devdatt, Hermansson, Malte

Recently Peres and Shields discovered a new method for estimating the order of a stationary fixed order Markov chain. They showed that the estimator is consistent by proving a threshold result. While...

A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity (2006)

Dalevi, Daniel, Dubhashi, Devdatt, Hermansson, Malte

Recently Peres and Shields discovered a new method for estimating the order of a stationary fixed order Markov chain. They showed that the estimator is consistent by proving a threshold result. While...

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation

Cvijović, Marija, Dalevi, Daniel, Bilsland, Elizabeth, Kemp, Graham JL, Sunnerhagen, Per

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool

Dalevi, Daniel, DeSantis, Todd Z, Fredslund, Jakob, Andersen, Gary L, Markowitz, Victor M, Hugenholtz, Philip

IMG/M: a data management and analysis system for metagenomes

Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, ...

IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data...

A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity

Daniel Dalevi, Devdatt Dubhashi, Malte Hermansson

Recently Peres and Shields discovered a new method for estimating the order of a stationary fixed order Markov chain. They showed that the estimator is consistent by proving a threshold result. While...

A Molecular Study of Microbe Transfer between Distant Environments

Hooper, Sean D., Raes, Jeroen, Foerstner, Konrad U., Harrington, Eoghan D., Dalevi, Daniel, Bork, Peer

Daniel Dalevi

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